RU05878 sequence (1820 bp)


Member Information
TCTTCTTCTTCTTCTTCTTCTCCACCTCTCCCAATTCTCTGTCTCTCATTCTCTCCAATGGAGGCAGTAAACGCATGGGGTA
ACACCAACCTGGAGGCCGTGGACCCAGAGATCCACGACCTGATCGAGAAGGAGAAGCGTCGCCAATGCCGCGGCATCGAGCT
CATCGCCTCCGAGAACTTCACCTCCTTCGCCGTCATCGAGGCCCTCGGCAGCGCCCTCACCAACAAATACTCCGAGGGCATG
CCCGGCAACCGCTACTACGGCGGCAACGAGTACATCGACCAGATCGAGAACCTCTGCCGCTCACGCGCCCTCCAGGCTTTCC
ACCTCGACGCGTCTCAGTGGGGCGTCAATGTCCAGCCTTACTCCGGCTCCCCGGCCAACTTCGCCGCCTACACCGCCGTGCT
CCAGCCCCACGACCGCATCATGGGCCTGGACCTCCCCTCCGGCGGGCACTTGACCCACGGGTACTACACCTCCGGCGGGAAG
AAGATCTCCGCCACCTCGATCTACTTCGAGAGTCTGCCGTACAAGGTGAATTCCTCCACCGGGTACATTGATTACGACAAGC
TGGAGGAGAAGGCCTTGGATTTCAGGCCGAGATTGATCATTTGCGGCGGGAGTGCGTATCCCAGAGACTGGGACTACGCTAG
GTTCAGGGCTGTGGCGGATAAGTGCGGTGCGCTTTTGCTCTGTGACATGGCTCACATCAGTGGCCTTGTTTGTGCTCAGGAA
GCTGCAAATCCATTTGAGTTCTGTGACATTGTCACAACCACAACCCACAAGAGCTTGAGGGGACCTAGGGCTGGTATGATCT
TTTACAGGAAGGGGCCTAAGCCACCCAAGAAGGGCCAGCCAGAGGGTGCAGAGTATGACTTTGAAGACAAGATCAACTTTGC
TGTTTTCCCCTCGCTTCAGGGTGGTCCTCATAATCACCAGATTGGTGCTCTCGCTGTTGCTCTTAAGCAGGCCATGACACCT
GGGTTCAAAGCCTATGCTCAACAAGTCAAGGCCAATGCTGTTGCCCTTGGAAAGTATCTGATGAGCAAGGATTACAAGCTTG
TCACAGGAGGAACCGAGAACCACCTTGTTCTGTGGGATCTCAGGCCTCTTGGTTTGACCGGCAACAAGGTTGAGAAGCTTTG
TGACCTAGCAAACATTACTGTGAACAAGAATGCTGTTTTTGGTGACAGCAGTGCCTTGGCTCCTGGAGGAGTTAGAATTGGT
GCTCCAGCCATGACTTCAAGAGGCTTGGTTGAGAAGGACTTTGAGAAGATTGGTGAGTTCCTTCACAGGGCTGTAACCCTCA
CCTTGAAGATCCAGAAGGAGTTTGGAAAGCTACTGAAAGACTTCAACAAGGGGTTGGTGAACAACAAGGAAATTGAAGAACT
CAAGGCTGATGTTGAAAAGTTCTCCGCCTCATTTGACATGCCTGGCTTCCAGATGTCTCAAATGAAGTACAAGGATTGAGTA
GGTTAATTAAGAATCCAATATTTTCAATATTGTGATAAATATATCGAGCCCTTGGAATTAAGGCACACCACAAAAATATAAT
ATGTCCATCGGAAAAGGAAAAAAGAAAAAGCTTTGTCTTGCTTTCCGTGTCGTAGGTCAGCTGTTTTGTTTTGGTTCCCATT
TAATGGTTTTCCATTCTCTTTTGTATTTGCTGTTATTGCTCCCTCAAATAAACCATGAATATTATTGTTTTATTAAATTTTA
GATAGTGAGAAATGAGTAAAAAAATTTATTCGAGCAGTATGTTATAATTCTGATTGGAAAAATAAAAAATTATGTTTACAGA
TGATATTCATTTAGAC


RU05878 Expression


Digital Expression:
ControlEthyleneWDSGenBankTotal
465903108

Probe ID Probe Sequeces
yueji_10939AATGATCAATCTCGGCCTGAAATCCAAGGCCTTCTCCTCCAGCTTGTCGTAATCAATGTA bl2seq


RU05878 Annotation


GenBank top hits
 Blast detail
Accession No. Description Score e value
ABO61376 serine hydroxymethyltransferase [Populus tremuloides] 2321 2e-259
ABK92558 unknown [Populus trichocarpa] 2320 3e-259
ABK94226 unknown [Populus trichocarpa] 2290 8e-256
ABO61381 serine hydroxymethyltransferase [Populus tremuloides] 2284 4e-255
NP_193129 SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase [Arabidopsis thaliana] 2260 2e-252

Swiss-Prot top hits
 Blast detail
Accession No. Description Score e value
Q54Z26 Serine hydroxymethyltransferase 1 1505 7e-166
Q54EW1 Serine hydroxymethyltransferase 2 1493 2e-164
P34899 Serine hydroxymethyltransferase, mitochondrial 1390 1e-152
Q9SZJ5 Serine hydroxymethyltransferase, mitochondrial 1381 2e-151
P49357 Serine hydroxymethyltransferase 1, mitochondrial 1367 7e-150

TrEMBL top hits
 Blast detail
Accession No. Description Score e value
A9PL04 Serine hydroxymethyltransferase 2241 4e-250
A9P855 Serine hydroxymethyltransferase 2240 5e-250
B9S9Y7 Serine hydroxymethyltransferase, putative 2239 6e-250
A9PCX3 Serine hydroxymethyltransferase 2210 1e-246
B9N0U0 Serine hydroxymethyltransferase 6 2207 3e-246

Arabidopsis top hits
 Blast detail
Accession No. Description Score e value
AT4G13930.1 SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding 2181 3e-245
AT4G13890.1 EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding 1957 2e-219
AT1G36370.1 SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding 1579 2e-175
AT1G22020.1 SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding 1556 8e-173
AT4G32520.1 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding 1393 6e-154