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Tools and databases

Databases and project websites:

Bioinformatics tools:
  • Plant MetGenMAP - a web-based tool for comprehensive mining and integration of gene expression and metabolite changes in the context of biochemical pathways.
  • iTAK - A package to identify and classify plant transcription factors and protein kinases. It also contains a database of plant transcription factors, transcriptional regulators and protein kinases
  • iAssembler - A de novo assembly package for transcriptome sequences generated using 454 or Sanger platforms
  • VirusDetect - an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.